PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0000700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 623aa    MW: 66547.6 Da    PI: 6.6237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0000700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12445490454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Spipo17G0000700 445 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLADAIAYINDL 490
                      799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4240194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.99441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-15444495No hitNo description
SuperFamilySSF474591.31E-19444513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10445490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-19445512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MMEAFMASSE AQGFAWPGSG VASSSSDPAG KFFASSVDVS NGASLLAWGD GYYKGCEEDK  60
RKMLPSQATS AADQEHRKKV LRELNSLISG APVAGEDAVD EEVTDTEWFF LVSMTQNFPN  120
GAGLPGHVLF TAAPVWVVGG ERLAAAGCER VRQAQAFGIQ TMVCVPVGGG VVEFGSTDLI  180
YQNIDIVDKV KVLFNFGGGG SFDAAAGAVV AAPPWPGAVA GDEGENDPSA VWISDPAVVE  240
IKGSMFENPS RSSLTGSGSS VQPQQHRQQP HPHPHHHHHR QQHPHQSPSI NNPQSQQGPF  300
TRELNFSDFG LNRSNPLQAL KAESGELMNF GESKRNSAAV AGGGAFAHQA EDRKRAKSAA  360
AAVATSRLSN DEGMLSFTSA AVVRPTMDEA AKSGGVGVSG DSGHSDVEAS VREAESRPAP  420
APALLEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL  480
ADAIAYINDL RSQLQALETE KEALQNQIES LMKKERQPPP PEIRTTVGGA AAAEVDVKIM  540
GKEAMIRVQS KRKNHPAARL MMALMEMELE VVYASVSVVN DLMIQQTTVR MSAAAAYTNE  600
QLSSALSSRI ADSSGPRVSN RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-443819637194Transcription factor MYC3
4rqw_B1e-443819637194Transcription factor MYC3
4rs9_A1e-443819637194Transcription factor MYC3
4yz6_A1e-443819637194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426434KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919958.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLF6HT900.0F6HT90_VITVI; Putative uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.16e-60bHLH family protein